ICHEC Software

Information about software packages installed on the ICHEC systems.

PhyloBayes

Versions Installed

Stokes: 3.2e

Stoney: 3.2e

Description

PhyloBayes is a Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments. Compared to other phylogenetic MCMC samplers (e.g. MrBayes), the main distinguishing feature of PhyloBayes is the underlying probabilistic model, CAT. It is particularly well suited for large multigene alignments, such as those used in phylogenomics.

License

The copyright for PhyloBayes is held by Nicolas Lartillot and Herve Philippe. Please refer to http://www.atgc-montpellier.fr/phylobayes/binaries.php for full copyright details.

Benchmarks

N/A.

Additional Notes

To use Phylobayes load the relevant environment module:

module load phylobayes

Further information can be obtained from http://www.atgc-montpellier.fr/phylobayes/.

How to cite PhyloBayes:

Please refer to http://www.atgc-montpellier.fr/phylobayes/paper.php for citation details.

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